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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43075114_43076359_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43075114 - 43076359
Intron Length:
1246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TTATTGTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTACTCAATC
Flanking Amino Acid:
VKKTDPLQAQERISDLAAIG
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
73.8
33
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.6
0.8
0.9
80
37.3
Minor 5ss
31.8
-2.1
3
37.5
47.2
Minor BPS
67.4
0.53
1.7
79.95
34.8

Associated Gene:

Gene:
GOLM1
Ensembl Gene ID:
ENSAPLG00000016726
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032792
43070414 - 43095166
24753