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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43076487_43080276_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43076487 - 43080276
Intron Length:
3790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTGG
5'SS Class:
major
3'SS Sequence:
ATTCACTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TGTATATTCACT
Flanking Amino Acid:
FPEDSKKSGQADSQLPALKQ
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
63
43.8
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
76.2
0.59
0.8
69.6
35.8
Minor 5ss
42.2
-0.9
3.1
55.4
48.8
Minor BPS
49.7
0.06
2.1
74.44
41.9

Associated Gene:

Gene:
GOLM1
Ensembl Gene ID:
ENSAPLG00000016726
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032792
43070414 - 43095166
24753