Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43125303_43127120_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43125303 - 43127120

Intron Length:

1818

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTGTA

5'SS Class:

strong_major

3'SS Sequence:

GTGTGTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAGAAT

U12 Branch Point Sequence:

TTTTTCTGCGTT

Flanking Amino Acid:

KQLLKDKPEHVGVKVGVRTR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

83.5

27.8

Major BPS

55.1

0.13

1.4

64.3

39.7

Major PPT

80.1

0.68

0.9

76.9

42.1

Minor 5ss

38.7

-1.3

3.4

53.7

43.8

Minor BPS

41.3

-0.5

3.6

76.16

Associated Gene:

Gene:

ISCA1

Ensembl Gene ID:

ENSAPLG00000025576

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025360

43122783 - 43128182

5400