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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4317564_4318630_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4317564 - 4318630
Intron Length:
1067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATTTGCTGAATG
Flanking Amino Acid:
QILLRTSEGV*
Intron Amino Acid Position:
1866

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
84.9
0.78
0.8
76.7
37.5
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
56.9
0.08
2
66.67
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018933
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043466
4252972 - 4318633
65662