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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4322252_4322864_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4322252 - 4322864
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAA
U12 Branch Point Sequence:
TCTTTCTCAATA
Flanking Amino Acid:
NHPVIQWFWKAVLLMDAEKR
Intron Amino Acid Position:
904

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
71.8
38.2
Major BPS
59.7
0.24
1.2
52.7
43.2
Major PPT
77
0.61
0.8
74.2
29.5
Minor 5ss
36.6
-1.5
3.2
51.3
45.2
Minor BPS
67.8
0.56
1.5
74.85
37.3

Associated Gene:

Gene:
NEDD4L
Ensembl Gene ID:
ENSAPLG00000008925
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040353
4320290 - 4457497
137208
ENSAPLT00000023400
4320290 - 4383217
62928
ENSAPLT00000009384
4320290 - 4457497
137208
ENSAPLT00000044498
4320290 - 4383793
63504
ENSAPLT00000043986
4320290 - 4383217
62928