About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4327634_4328507_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4327634 - 4328507
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCAGAA
U12 Branch Point Sequence:
GCAGAGGTAACA
Flanking Amino Acid:
LAVYHGKLLDGFFIRPFYKM
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.2
28.3
Major BPS
49.9
-0
1.1
46.7
38.9
Major PPT
74.2
0.54
0.8
72.1
32.5
Minor 5ss
35.2
-1.7
2.8
40.3
40.2
Minor BPS
36.7
-1
2.5
45.37
43.5

Associated Gene:

Gene:
NEDD4L
Ensembl Gene ID:
ENSAPLG00000008925
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043986
4320290 - 4383217
62928
ENSAPLT00000040353
4320290 - 4457497
137208
ENSAPLT00000023400
4320290 - 4383217
62928
ENSAPLT00000009384
4320290 - 4457497
137208
ENSAPLT00000044498
4320290 - 4383793
63504