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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4328630_4330016_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4328630 - 4330016
Intron Length:
1387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCAAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TTTCCCCAAAAT
Flanking Amino Acid:
PYYGLFEYSATDNYTLQINP
Intron Amino Acid Position:
706

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.2
85.3
32.2
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
60.1
0.23
0.9
56.1
32.5
Minor 5ss
41.7
-0.9
2.8
54.1
36.1
Minor BPS
52.1
0.14
2.1
79.92
41.3

Associated Gene:

Gene:
NEDD4L
Ensembl Gene ID:
ENSAPLG00000008925
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043986
4320290 - 4383217
62928
ENSAPLT00000040353
4320290 - 4457497
137208
ENSAPLT00000023400
4320290 - 4383217
62928
ENSAPLT00000009384
4320290 - 4457497
137208
ENSAPLT00000044498
4320290 - 4383793
63504