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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4330247_4331591_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4330247 - 4331591
Intron Length:
1345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TCCTTTCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TCTCCTTTCACA
Flanking Amino Acid:
DYFRKKLKKPADIPNRFEMK
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.3
74.4
37.7
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
76.6
0.6
0.8
72.2
31.5
Minor 5ss
35.7
-1.6
2.9
46.9
41.8
Minor BPS
62
0.37
1.8
72.26
40.2

Associated Gene:

Gene:
NEDD4L
Ensembl Gene ID:
ENSAPLG00000008925
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040353
4320290 - 4457497
137208
ENSAPLT00000023400
4320290 - 4383217
62928
ENSAPLT00000009384
4320290 - 4457497
137208
ENSAPLT00000044498
4320290 - 4383793
63504
ENSAPLT00000043986
4320290 - 4383217
62928