Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4333829_4337798_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4333829 - 4337798

Intron Length:

3970

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTAAGTAAG

5'SS Class:

major

3'SS Sequence:

CTGTTATTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATAAT

U12 Branch Point Sequence:

TCTTCTGTTATT

Flanking Amino Acid:

LDGRTFYIDHNNKITQWEDP

Intron Amino Acid Position:

840

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

73.4

37.2

Major BPS

0.72

78.4

31.2

Major PPT

82.5

0.73

0.9

76.4

36.7

Minor 5ss

36.9

-1.5

2.7

44.1

38.5

Minor BPS

49.7

0.06

2.3

74.98

42.6

Associated Gene:

Gene:

NEDD4L

Ensembl Gene ID:

ENSAPLG00000008925

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043986

4320290 - 4383217

62928

ENSAPLT00000023400

4320290 - 4383217

62928