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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43338597_43339400_F

Intron Information:

Intron Rank:
145743
Intron Class:
major
Intron Phase:
Intron Coordinates:
43338597 - 43339400
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGAAAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTGTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
71.7
33
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.6
0.6
1.1
79.4
32.9
Minor 5ss
35.4
-1.7
3
46.4
43
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028537
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027728
43338444 - 43340176
1733