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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43338597_43339984_F

Intron Information:

Intron Rank:
145745
Intron Class:
major
Intron Phase:
Intron Coordinates:
43338597 - 43339984
Intron Length:
1388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGAAAA
5'SS Class:
major
3'SS Sequence:
CATTTTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TGTGAGTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
71.7
33
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
79.5
0.66
0.8
73.1
36.9
Minor 5ss
35.4
-1.7
3
46.4
43
Minor BPS
44.7
-0.3
2.5
69.33
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028537
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041719
43338444 - 43340176
1733