About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43385685_43413886_F

Intron Information:

Intron Rank:
142678
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
43385685 - 43413886
Intron Length:
28202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
CTGATGAAAGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTAGTCTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
74.7
35.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
54.5
0.1
1.1
48.7
42.8
Minor 5ss
36.1
-1.6
3.5
59
45.5
Minor BPS
74.7
0.75
1.3
78.69
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026905
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018491
43385443 - 43414900
29458