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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4340278_4341068_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4340278 - 4341068
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
ATATCTATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
AGTTCCATATAT
Flanking Amino Acid:
IDHNTKTTTWEDPRLKFPVH
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
69.6
42.7
Major BPS
75
0.62
1
65.3
41.5
Major PPT
77.1
0.61
0.9
70.2
39.3
Minor 5ss
31.2
-2.2
3.1
31.3
42.6
Minor BPS
51.1
0.11
2
74.06
41.9

Associated Gene:

Gene:
NEDD4L
Ensembl Gene ID:
ENSAPLG00000008925
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009384
4320290 - 4457497
137208
ENSAPLT00000044498
4320290 - 4383793
63504
ENSAPLT00000043986
4320290 - 4383217
62928
ENSAPLT00000040353
4320290 - 4457497
137208
ENSAPLT00000023400
4320290 - 4383217
62928