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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4342636_4343136_R

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4342636 - 4343136
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CCATCTGAACTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TCCATCTGAACT
Flanking Amino Acid:
TTTWTRPIMQLAEDGMVGSA
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73
31.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
54.3
0.1
1
47.8
39.3
Minor 5ss
35.8
-1.6
3.3
46.4
48.9
Minor BPS
60.6
0.41
1.5
72.97
43.9

Associated Gene:

Gene:
NEDD4L
Ensembl Gene ID:
ENSAPLG00000008925
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043986
4320290 - 4383217
62928
ENSAPLT00000040353
4320290 - 4457497
137208
ENSAPLT00000023400
4320290 - 4383217
62928
ENSAPLT00000009384
4320290 - 4457497
137208
ENSAPLT00000044498
4320290 - 4383793
63504