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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4348255_4350084_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4348255 - 4350084
Intron Length:
1830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TATCATTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TATCATTTAACA
Flanking Amino Acid:
TVAEQSQLSLQSGPSRRARS
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.9
35.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
74.7
0.55
1
69.8
39.8
Minor 5ss
38.8
-1.3
2.9
45.4
43.9
Minor BPS
67.5
0.55
1.5
75.39
35.1

Associated Gene:

Gene:
NEDD4L
Ensembl Gene ID:
ENSAPLG00000008925
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044498
4320290 - 4383793
63504
ENSAPLT00000043986
4320290 - 4383217
62928
ENSAPLT00000040353
4320290 - 4457497
137208
ENSAPLT00000009384
4320290 - 4457497
137208