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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4352289_4353888_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4352289 - 4353888
Intron Length:
1600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CCCCACTATCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGTAC
U12 Branch Point Sequence:
TTTTCCCCACTA
Flanking Amino Acid:
RTTQWHRPSLIDVGSDSDNN
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
73
37.8
Major BPS
49.7
-0
1.4
52.7
42.9
Major PPT
66.9
0.38
0.9
57.3
37.4
Minor 5ss
35.5
-1.7
3.3
48.1
41.3
Minor BPS
49.8
-0
2.1
72.38
39.9

Associated Gene:

Gene:
NEDD4L
Ensembl Gene ID:
ENSAPLG00000008925
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040353
4320290 - 4457497
137208
ENSAPLT00000023400
4320290 - 4383217
62928
ENSAPLT00000009384
4320290 - 4457497
137208
ENSAPLT00000044498
4320290 - 4383793
63504
ENSAPLT00000043986
4320290 - 4383217
62928