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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_435278_435328_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
435278 - 435328
Intron Length:
51

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CGA|GCCCGTTTG
5'SS Class:
weak_major
3'SS Sequence:
TGGCCCGAGGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CAGCCAC
U12 Branch Point Sequence:
TTGGCCCGAGGC
Flanking Amino Acid:
WHWWGRHPKRRLRAWLVLAF
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.7
0.04
1.3
51.9
44.7
Major BPS
42.9
-0.4
1.2
45.5
37.5
Major PPT
52
0.05
1.1
46.9
40.6
Minor 5ss
29.1
-2.4
4
36.8
41.5
Minor BPS
39.5
-0.8
2.2
51.75
45.2

Associated Gene:

Gene:
PIGO
Ensembl Gene ID:
ENSAPLG00000016451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030364
427885 - 439016
11132