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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4356518_4359368_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4356518 - 4359368
Intron Length:
2851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TAAATACTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATTTTCTTAAAT
Flanking Amino Acid:
QVDVPLSHLPTEDPTMERPY
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
73.1
43.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
66.9
0.38
1
59.9
41.2
Minor 5ss
41.6
-0.9
3
58.6
45.7
Minor BPS
80.3
1.03
1.2
91.56
30.6

Associated Gene:

Gene:
NEDD4L
Ensembl Gene ID:
ENSAPLG00000008925
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023400
4320290 - 4383217
62928
ENSAPLT00000009384
4320290 - 4457497
137208
ENSAPLT00000044498
4320290 - 4383793
63504
ENSAPLT00000043986
4320290 - 4383217
62928
ENSAPLT00000040353
4320290 - 4457497
137208