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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4359420_4381654_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4359420 - 4381654
Intron Length:
22235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCTAT
U12 Branch Point Sequence:
TTTTCTTCTATT
Flanking Amino Acid:
TPGPTPASTTTRDDFLGQVD
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
82.1
37.7
Major BPS
61.5
0.29
1.3
62.1
44.1
Major PPT
78.8
0.65
1
75.7
37.9
Minor 5ss
39.8
-1.1
2.8
52.3
44.3
Minor BPS
61.5
0.44
1.8
83.99
37

Associated Gene:

Gene:
NEDD4L
Ensembl Gene ID:
ENSAPLG00000008925
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044498
4320290 - 4383793
63504
ENSAPLT00000043986
4320290 - 4383217
62928
ENSAPLT00000023400
4320290 - 4383217
62928