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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43626264_43628675_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
43626264 - 43628675
Intron Length:
2412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
TCCTTCTTAAAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
73.3
0.52
1
73.8
28.7
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
64.8
0.33
1.5
63.72
44.3

Associated Gene:

Gene:
DAPK1
Ensembl Gene ID:
ENSAPLG00000014607
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017226
43610193 - 43660594
50402
ENSAPLT00000015325
43626125 - 43663639
37515
ENSAPLT00000034419
43612791 - 43663639
50849