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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43628806_43629078_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43628806 - 43629078
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATATGCTGATCT
Flanking Amino Acid:
KNIFGTPEFVAPEIVNYEPL
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
74.8
29.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
87
0.83
0.6
86.1
20.7
Minor 5ss
27.5
-2.6
2.7
28.2
37.3
Minor BPS
49
0.01
2.1
72.42
44

Associated Gene:

Gene:
DAPK1
Ensembl Gene ID:
ENSAPLG00000014607
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034419
43612791 - 43663639
50849
ENSAPLT00000017226
43610193 - 43660594
50402
ENSAPLT00000015325
43626125 - 43663639
37515