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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43629128_43629257_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43629128 - 43629257
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCACTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCTTTTCACT
Flanking Amino Acid:
YEPLGLEADMWSIGVITYIL
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.2
28.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83
0.74
0.8
74.6
34.9
Minor 5ss
35.2
-1.7
2.8
40.3
40.2
Minor BPS
64.5
0.54
1.7
84.55
36.3

Associated Gene:

Gene:
DAPK1
Ensembl Gene ID:
ENSAPLG00000014607
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034419
43612791 - 43663639
50849