About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43629285_43629700_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43629285 - 43629700
Intron Length:
416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TGTGTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CAACATGTAATG
Flanking Amino Acid:
MWSIGVITYILLSGASPFLG
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
72.2
37.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82.9
0.74
0.9
77.3
37
Minor 5ss
39.9
-1.1
2.8
57.3
39.7
Minor BPS
40.3
-0.8
2
39.44
38.1

Associated Gene:

Gene:
DAPK1
Ensembl Gene ID:
ENSAPLG00000014607
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034419
43612791 - 43663639
50849