Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_436316_436778_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

436316 - 436778

Intron Length:

463

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CGT|GCCAGGAGC

5'SS Class:

weak_major

3'SS Sequence:

CTCTCTTTCAGAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAT

U12 Branch Point Sequence:

CTCTCTTTCAGA

Flanking Amino Acid:

AFVLLHIHTRSFSVPWFAVI

Intron Amino Acid Position:

706

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.1

0.1

1.4

62.3

38.8

Major BPS

83.5

0.83

0.8

71.6

36.4

Major PPT

61.3

0.25

1.7

33.3

Minor 5ss

19.7

-3.5

3.7

26.7

36.3

Minor BPS

49.3

-0

2.1

61.93

45.1

Associated Gene:

Gene:

PIGO

Ensembl Gene ID:

ENSAPLG00000016451

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030364

427885 - 439016

11132