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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43659339_43660458_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43659339 - 43660458
Intron Length:
1120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
ACTGAATAGACG
Flanking Amino Acid:
DMSLLKEIRNRFGNDLHISD
Intron Amino Acid Position:
762

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
69.9
41.1
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
87.7
0.85
0.6
81.2
30.8
Minor 5ss
29.8
-2.3
3.3
38.5
46.6
Minor BPS
39.2
-1
2.1
42.54
42.6

Associated Gene:

Gene:
DAPK1
Ensembl Gene ID:
ENSAPLG00000014607
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034419
43612791 - 43663639
50849
ENSAPLT00000017226
43610193 - 43660594
50402
ENSAPLT00000015325
43626125 - 43663639
37515