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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43691663_43691744_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43691663 - 43691744
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
GAATTTTCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTGTTTTGAATT
Flanking Amino Acid:
KLGMNQFGDMTTEEFRQLMN
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.9
34.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
77.3
0.61
0.9
74
41
Minor 5ss
44.6
-0.6
2.5
57.8
40.7
Minor BPS
66.3
0.59
1.3
79.83
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014266
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014893
43691030 - 43695748
4719