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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43692461_43694012_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43692461 - 43694012
Intron Length:
1552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTTTATTC
Flanking Amino Acid:
SEESYPYTAKDDEDCRYKAE
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.8
0.96
0.7
93
23.9
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
60.4
0.31
1.6
68.82
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014266
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014893
43691030 - 43695748
4719