About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_436981_437282_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
436981 - 437282
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
GTCCTTGAGGTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTGTCCTTGAGG
Flanking Amino Acid:
NTFASHILFAVGCPLLLLWP
Intron Amino Acid Position:
773

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
56.9
0.16
1.1
54.1
40.6
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
66.4
0.37
1.7
70.37
43.3

Associated Gene:

Gene:
PIGO
Ensembl Gene ID:
ENSAPLG00000016451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030364
427885 - 439016
11132