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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43737748_43738989_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43737748 - 43738989
Intron Length:
1242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGAAC
5'SS Class:
major
3'SS Sequence:
TTCTTATTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTAATATTAACA
Flanking Amino Acid:
GGVNCFMLDPAIGEFILVDR
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
69.5
36.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.3
0.59
0.9
77.7
35.7
Minor 5ss
27.6
-2.6
3
34.7
41.5
Minor BPS
56.8
0.21
1.7
65.91
40.1

Associated Gene:

Gene:
FBP1
Ensembl Gene ID:
ENSAPLG00000013867
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014467
43734907 - 43744602
9696