Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43790158_43797095_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43790158 - 43797095

Intron Length:

6938

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGTGAC

5'SS Class:

strong_major

3'SS Sequence:

TCCTTCAATTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTTAT

U12 Branch Point Sequence:

ATTCCTTCAATT

Flanking Amino Acid:

SVTWTTDQSGRPCVYTMGSP

Intron Amino Acid Position:

269

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

33.9

Major BPS

78.8

0.72

67.9

40.1

Major PPT

72.3

0.5

0.9

70.9

33.6

Minor 5ss

31.9

-2.1

3.3

44.6

Minor BPS

65.1

0.55

1.5

80.23

35.6

Associated Gene:

Gene:

AOPEP

Ensembl Gene ID:

ENSAPLG00000013767

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017464

43789204 - 43971995

182792

ENSAPLT00000043111

43789352 - 43968806

179455

ENSAPLT00000014349

43789352 - 43971298

181947

ENSAPLT00000027390

43789204 - 43974473

185270

ENSAPLT00000026490

43789352 - 43958056

168705

ENSAPLT00000017612

43789352 - 43971298

181947