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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43797263_43811264_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43797263 - 43811264
Intron Length:
14002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAATAT
5'SS Class:
major
3'SS Sequence:
TTTTTACTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACTC
Flanking Amino Acid:
NSAEPVQLQEGIMSWYYYVT
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
76.2
28.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.1
0.81
0.7
81
29.9
Minor 5ss
33.5
-1.9
3.2
46.6
48.7
Minor BPS
60.1
0.3
1.6
68.66
38.1

Associated Gene:

Gene:
AOPEP
Ensembl Gene ID:
ENSAPLG00000013767
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017612
43789352 - 43971298
181947
ENSAPLT00000017464
43789204 - 43971995
182792
ENSAPLT00000043111
43789352 - 43968806
179455
ENSAPLT00000014349
43789352 - 43971298
181947
ENSAPLT00000027390
43789204 - 43974473
185270
ENSAPLT00000026490
43789352 - 43958056
168705