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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43814690_43855819_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43814690 - 43855819
Intron Length:
41130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCCACTGTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TTGTCCTTCATT
Flanking Amino Acid:
PSNFSSLGMASPHIIFLSQS
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
75
0.62
1.1
77.2
36
Major PPT
70.3
0.46
1
63.8
36.6
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
72.8
0.8
1.7
87.53
38.7

Associated Gene:

Gene:
AOPEP
Ensembl Gene ID:
ENSAPLG00000013767
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014349
43789352 - 43971298
181947
ENSAPLT00000027390
43789204 - 43974473
185270
ENSAPLT00000026490
43789352 - 43958056
168705
ENSAPLT00000017612
43789352 - 43971298
181947
ENSAPLT00000017464
43789204 - 43971995
182792
ENSAPLT00000043111
43789352 - 43968806
179455