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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4382875_4383702_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4382875 - 4383702
Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAACTA
5'SS Class:
major
3'SS Sequence:
TAACTTCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGGTTTTTAACT
Flanking Amino Acid:
VSGFHSSLLPVPELLLFSLS
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
66.8
38.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
69.8
0.44
1
65.9
40.3
Minor 5ss
35
-1.7
3.3
44.6
44.3
Minor BPS
76.2
0.9
1.1
83.91
37.2

Associated Gene:

Gene:
NEDD4L
Ensembl Gene ID:
ENSAPLG00000008925
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044498
4320290 - 4383793
63504