Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_438317_438895_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

438317 - 438895

Intron Length:

579

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTCCC

5'SS Class:

strong_major

3'SS Sequence:

GTTGTCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTGAT

U12 Branch Point Sequence:

ATATCCTTACTG

Flanking Amino Acid:

HLMVWKVFAPKFLFESLGFV

Intron Amino Acid Position:

864

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

72.6

37.3

Major BPS

68.9

0.47

1.2

60.7

45.9

Major PPT

77.6

0.62

0.9

70.4

36.3

Minor 5ss

37.2

-1.4

2.9

46.5

35.3

Minor BPS

0.3

1.7

66.59

41.4

Associated Gene:

Gene:

PIGO

Ensembl Gene ID:

ENSAPLG00000016451

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030364

427885 - 439016

11132