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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43856010_43857923_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
43856010 - 43857923
Intron Length:
1914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
GTACACTAAGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CAATGAT
U12 Branch Point Sequence:
TTTTCGTACACT
Flanking Amino Acid:
EDVFWARAQQLSHDEEKAQQ
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.9
75.7
36.7
Major BPS
64.5
0.36
1.1
55.4
40.3
Major PPT
57.9
0.18
1.1
52.3
41.3
Minor 5ss
36.1
-1.6
3.3
47.1
48.3
Minor BPS
49.5
0.04
2.7
83.33
44.1

Associated Gene:

Gene:
AOPEP
Ensembl Gene ID:
ENSAPLG00000013767
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017612
43789352 - 43971298
181947
ENSAPLT00000017464
43789204 - 43971995
182792
ENSAPLT00000043111
43789352 - 43968806
179455
ENSAPLT00000014349
43789352 - 43971298
181947
ENSAPLT00000027390
43789204 - 43974473
185270
ENSAPLT00000026490
43789352 - 43958056
168705