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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43880649_43895317_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43880649 - 43895317
Intron Length:
14669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCCGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
GCCGCCTCACCG
Flanking Amino Acid:
NWLDSSGIPKPLLEEGETWK
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
70.8
0.47
0.9
64.8
30.7
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
43.9
-0.6
2
43.65
47.8

Associated Gene:

Gene:
AOPEP
Ensembl Gene ID:
ENSAPLG00000013767
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027390
43789204 - 43974473
185270
ENSAPLT00000026490
43789352 - 43958056
168705
ENSAPLT00000017464
43789204 - 43971995
182792
ENSAPLT00000043111
43789352 - 43968806
179455