About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43880649_43950234_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43880649 - 43950234
Intron Length:
69586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
AATTTTCTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGGCATTTAATT
Flanking Amino Acid:
NWLDSSGIPKLLPDQLVLLL
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.8
0.67
0.8
74.7
35.2
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
58.5
0.35
1.5
71.09
40

Associated Gene:

Gene:
AOPEP
Ensembl Gene ID:
ENSAPLG00000013767
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014349
43789352 - 43971298
181947