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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43895381_43896100_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43895381 - 43896100
Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGAACTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCTTCCTAAAAA
Flanking Amino Acid:
SRLVQQVSGEVTKWIRTNQR
Intron Amino Acid Position:
685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
77.5
0.62
0.9
67.9
42.5
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
66.4
0.51
1.8
76.43
40.8

Associated Gene:

Gene:
AOPEP
Ensembl Gene ID:
ENSAPLG00000013767
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027390
43789204 - 43974473
185270
ENSAPLT00000026490
43789352 - 43958056
168705
ENSAPLT00000017464
43789204 - 43971995
182792
ENSAPLT00000043111
43789352 - 43968806
179455