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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43896185_43950234_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43896185 - 43950234
Intron Length:
54050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
AATTTTCTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGGCATTTAATT
Flanking Amino Acid:
RRQDEGTFQKLLPDQLVLLL
Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.1
31
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.8
0.67
0.8
74.7
35.2
Minor 5ss
30.9
-2.2
3.6
45.9
49.3
Minor BPS
58.5
0.35
1.5
71.09
40

Associated Gene:

Gene:
AOPEP
Ensembl Gene ID:
ENSAPLG00000013767
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026490
43789352 - 43958056
168705
ENSAPLT00000017612
43789352 - 43971298
181947
ENSAPLT00000017464
43789204 - 43971995
182792
ENSAPLT00000043111
43789352 - 43968806
179455
ENSAPLT00000027390
43789204 - 43974473
185270