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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43950352_43967527_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43950352 - 43967527
Intron Length:
17176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCCCGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTTATT
Flanking Amino Acid:
TYQLRDQDAEVRHRWCELVV
Intron Amino Acid Position:
703

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73
38.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
66.3
0.37
1
67.2
26.6
Minor 5ss
31
-2.2
3.3
41
45.6
Minor BPS
62.9
0.49
1.9
83.69
36.7

Associated Gene:

Gene:
AOPEP
Ensembl Gene ID:
ENSAPLG00000013767
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017612
43789352 - 43971298
181947
ENSAPLT00000017464
43789204 - 43971995
182792
ENSAPLT00000014349
43789352 - 43971298
181947
ENSAPLT00000043111
43789352 - 43968806
179455
ENSAPLT00000027390
43789204 - 43974473
185270