Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_43990228_43993050_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43990228 - 43993050

Intron Length:

2823

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TTGTTCCTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TCTCCTTTAATC

Flanking Amino Acid:

TKNLQRIQTMAEARAVYNHL

Intron Amino Acid Position:

445

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.8

79.2

28.9

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

86.4

0.82

0.8

80.7

31.5

Minor 5ss

29.1

-2.4

3.2

36.8

41.9

Minor BPS

73.6

0.72

1.2

75.34

35.5

Associated Gene:

Gene:

FANCC

Ensembl Gene ID:

ENSAPLG00000013504

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040951

43988026 - 44055958

67933

ENSAPLT00000014118

43988026 - 44060060

72035