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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44016640_44017412_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44016640 - 44017412
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTACTTTATTT
Flanking Amino Acid:
ADYYCHLVENIVSSLVTELR
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
27
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.7
0.96
0.7
87.8
29.3
Minor 5ss
41.1
-1
3.4
62.8
42
Minor BPS
67.5
0.63
1.6
84.37
36.8

Associated Gene:

Gene:
FANCC
Ensembl Gene ID:
ENSAPLG00000013504
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040951
43988026 - 44055958
67933
ENSAPLT00000014118
43988026 - 44060060
72035