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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44055621_44059959_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
44055621 - 44059959
Intron Length:
4339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCGAA
5'SS Class:
major
3'SS Sequence:
TTTCGTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGAGTTGTAATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
68.7
38.3
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
83.8
0.76
0.8
76.4
37.6
Minor 5ss
34.6
-1.8
3.5
46.3
49
Minor BPS
45.7
-0.3
2
54.57
38.3

Associated Gene:

Gene:
FANCC
Ensembl Gene ID:
ENSAPLG00000013504
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014118
43988026 - 44060060
72035