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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44095096_44096186_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44095096 - 44096186
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
ATCTATCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TGCTTTTTCAGA
Flanking Amino Acid:
TENPVFARSTVVQPETRHQS
Intron Amino Acid Position:
1238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
74.7
35.4
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
79.3
0.66
0.9
69.9
40.6
Minor 5ss
37.8
-1.4
3
55.7
41.6
Minor BPS
47.1
-0.2
2
58.49
42

Associated Gene:

Gene:
PTCH1
Ensembl Gene ID:
ENSAPLG00000012739
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013331
44094568 - 44155660
61093