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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44096417_44097802_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

44096417 - 44097802

Intron Length:

1386

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAAAACTC

5'SS Class:

major

3'SS Sequence:

ATGGACGAAACAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

TTGTCATCACCA

Flanking Amino Acid:

LSFFGPYPEVNYPHHLLSHP

Intron Amino Acid Position:

1161

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.9

0.28

1.1

57.3

40.3

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

49.3

-0

1.1

40.6

42.4

Minor 5ss

38.1

-1.3

3.4

56.9

41.5

Minor BPS

49.6

-0

2.1

68.88

43.3

Associated Gene:

Gene:

PTCH1

Ensembl Gene ID:

ENSAPLG00000012739

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013331

44094568 - 44155660

61093