Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44101029_44103808_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44101029 - 44103808

Intron Length:

2780

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTATGTAAA

5'SS Class:

strong_major

3'SS Sequence:

CATTGTTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

GTGTAATGAAAT

Flanking Amino Acid:

GVEFTVHVALAFLTAIGDKN

Intron Amino Acid Position:

1079

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

77.7

31.7

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

82.4

0.73

0.9

75.8

37.8

Minor 5ss

41.3

-1

2.5

47.2

43.7

Minor BPS

46.2

-0.2

65.92

43.4

Associated Gene:

Gene:

PTCH1

Ensembl Gene ID:

ENSAPLG00000012739

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023798

44096344 - 44155709

59366

ENSAPLT00000013331

44094568 - 44155660

61093