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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44105746_44107230_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44105746 - 44107230

Intron Length:

1485

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

ATCCTTTTCCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

ATGCATTTAAAC

Flanking Amino Acid:

ADYMPETRLRIPAAEPIEYA

Intron Amino Acid Position:

939

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

84.2

26.3

Major BPS

81.6

0.78

0.8

24.9

Major PPT

75.9

0.58

0.8

69.2

36.3

Minor 5ss

37.7

-1.4

2.7

46.1

36.1

Minor BPS

51.4

0.03

1.6

60.7

Associated Gene:

Gene:

PTCH1

Ensembl Gene ID:

ENSAPLG00000012739

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023798

44096344 - 44155709

59366

ENSAPLT00000013331

44094568 - 44155660

61093