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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44117899_44124552_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44117899 - 44124552

Intron Length:

6654

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTTTA

5'SS Class:

strong_major

3'SS Sequence:

GATTGATCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

TTGTGATTGATC

Flanking Amino Acid:

IPALRAFSLQAAVVVVFNFA

Intron Amino Acid Position:

554

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

0.8

86.9

22.7

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

66.3

0.37

44.5

Minor 5ss

45.5

-0.5

2.8

58.5

40.4

Minor BPS

49.6

-0

2.1

66.36

Associated Gene:

Gene:

PTCH1

Ensembl Gene ID:

ENSAPLG00000012739

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023798

44096344 - 44155709

59366

ENSAPLT00000013331

44094568 - 44155660

61093