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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44128089_44129658_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44128089 - 44129658
Intron Length:
1570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCACGTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCTCTCCACG
Flanking Amino Acid:
TVKNSSGKLVSAQALQTMFQ
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.7
0.49
0.9
63.8
36.5
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
49.6
-0.1
2.1
64.73
43.1

Associated Gene:

Gene:
PTCH1
Ensembl Gene ID:
ENSAPLG00000012739
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023798
44096344 - 44155709
59366
ENSAPLT00000013331
44094568 - 44155660
61093