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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_44129781_44130370_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44129781 - 44130370
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCACTTTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GCTTCTTTATCA
Flanking Amino Acid:
ITAPNKNSTKPLDVALVLSG
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
79.8
0.67
0.8
73
37.1
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
65.5
0.48
1.6
71.66
40.8

Associated Gene:

Gene:
PTCH1
Ensembl Gene ID:
ENSAPLG00000012739
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023798
44096344 - 44155709
59366
ENSAPLT00000013331
44094568 - 44155660
61093